U12-type intron prediction and file parsing utility in modern C++
DESCRIPTION
This program is meant to find and predict U12 introns.
CLONING
Make sure to use --recursive when cloning the git repository; otherwise you
will need to manually initialize the submodules in the lib directory.
USAGE
See the USAGE file for more information on how to use this program.
BUILDING
This program requires a C++17-compatible compiler, and if you have GNU Make
installed, you can use the Makefile to compile it.
LIBRARIES
This program uses the following external dependencies (represented as
submodules in this repository):
- gtf-cpp for GTF parsing (github/willeccles/gtf-cpp)
- fasta-cpp for FASTA parsing (github/willeccles/gtf-cpp)
- pdqsort to sort arrays quickly without relying on std::sort (github/orlp/pdqsort)