IPO

A Tool for automated Optimization of XCMS Parameters

rietho
34
20
R

IPO

How long since the package was first in a released Bioconductor version (or is it in devel only).
Percentile (top 5/20/50% or 'available') of downloads over last 6 full months. Comparison is done across all package categories (software, annotation, experiment).
Project Status: Unsupported – The project has reached a stable, usable state but the author(s) have ceased all work on it. A new maintainer may be desired.

Latest release:
Build Status Biocondcutor Release
Devel:
Build Status Biocondcutor Devel
codecov
@master:
Build Status Travis-CI

IPO (‘Isotopologue Parameter Optimization’) is a tool for automated Optimization of XCMS Parameters. It is a fast and free of labeling steps, and applicable to data from different kinds of samples and data from different methods of liquid chromatography - high resolution mass spectrometry and data from different instruments.

Find out more about the usage in the package vignette (Biocondcutor development version). The publication is available from http://www.biomedcentral.com/1471-2105/16/118.

Installation

Get the latest release version from Bioconductor:

## try http:// if https:// URLs are not supported
if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("IPO")

Or the development version from Github:

# install.packages("devtools")
devtools::install_github("rietho/IPO")