phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share th...
Utilities for working with formulas, expressions, calls and other R objects
:alarm_clock: This R package provides the tools to perform standard and robust wavelet variance analysis for time series (signal processing). Among others, aside f...
Hierarchical Model of Species Communities (HMSC) is an R package, which provides extensive set of analytical tools devised for numerical analysis of data on ecolog...
DriverML identifies cancer driver genes. Rigorous and unbiased benchmark analysis and comparisons of DriverML with some existing tools in 31 independent datasets f...
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/...
The coMET package is a web-based plotting tool and R-based package to visualize different genome-wide association scans such as EWAS (epigenome-wide association sc...
An R package of support tools that didn’t fit other categories, including tools for maintaining R libraries....
A repository of analytics tools for GeoBeer events, suitable also for other organizers. If you want to read about the insights of these analyses, head over to http...
An interactive tool to visualize the effects of reducing missing data or removing samples in ddRAD and other similar datasets...
CTS is a tool that enables users to explore, search, sort, mine, and visualize large numbers of cyber incident tickets (and some other kinds of tickets) at the sam...
Set of R tools for analyzing real estate data from Zillow and other sources.
:exclamation: This is a read-only mirror of the CRAN R package repository. phytools — Phylogenetic Tools for Comparative Biology (and Other Things). Homepage: htt...
An R-based command line tool designed to prepare climate inputs for WEPP, which has been extended to perform other general functions such as quality checking, gap...
A number of studies have used data envelopment analysis (DEA) or other techniques to rebuild the Human Development Index (HDI). While competition exists among the...
Tools for data analysis of microarray and other transcriptome datasets
Tools to Score Patient-Reported Outcome (PRO) Measures and Other Psychometric Instruments
some internal CSU PMF tools. Feel free to use these, but feature requests and other support requests are not likely to be honored....
A set of statistical workflows implemented in R v3.5.0 and mostly consisting of wrappers for dimensionality reduction (e.g. PCA), unsupervised classification (e.g....
A collection of R scripts (among others) for geographic processing wrapped in command line tools.
Instructions and checklist for getting started using R, make, latex, and other tools
Protein interaction data tools, retrieving data from IntAct and most other databases
PLMcctools: A package containing some simple tools for handling Collaborative Cross data sets, and other miscellanea....
My collection of tools programmed in R or other languages integrated into R
My contributions to TidyTuesday, which is a weekly data project created by Thomas Mock aimed at the R ecosystem with an emphasis on understanding how to summarize...
Note: This is one of the two complementary competitions that together comprise the M5 forecasting challenge. Can you estimate, as precisely as possible, the point...
This package provides a multi-dimensional kernel smoother, as well as an anisotropic smoother based on Perona-Malik equation and some tools for hypothesis testing...
Note: This is one of the two complementary competitions that together comprise the M5 forecasting challenge. Can you estimate, as precisely as possible, the point...
In this work, we provide a new approach to portfolio selection based on game cross efficiency model. While game cross efficiency is developed as a remedy for weigh...
This will be a growing collection of custom R functions incorporating other Bioinformatics tools that I find useful....
Reproducible Data Science using RMarkdown, Git, R packages, Docker, Make & Drake, and other tools
RClimTool has been designed in order to support and automate the analysis process of climatic time series. It is not intended to compete, or supplant other tools a...
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool developmen...
:no_entry: ARCHIVED :no_entry: An R package that provides tools to review other R packages
Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output...
Introduction to R R is a programming language, which is an object oriented language created by Statisticians, R provides objects, operators and functions that all...
The juicr R package is a GUI interface to automated, semi-automated, and manual tools for extracting data from scientific images -- like scatter or bar plots that...