scCustomize

scCustomize is a collection of functions created and/or curated to aid
in the visualization and analysis of single-cell data using R.

Vignettes/Tutorials

See accompanying scCustomize
website for detailed
tutorials of all aspects of scCustomize functionality.

Installing scCustomize

scCustomize can be installed from
CRAN on all platforms.
For more detailed instructions see
Installation.

# Base R
install.packages("scCustomize")

# Using pak
pak::pkg_install("scCustomize")

Release Notes

A full copy of the changes in each version can be found in the
NEWS/ChangeLog.

Develop branch
I also maintain a separate development branch^* that can be
installed by supplying ref = "develop" in the devtools or remotes
installation command. Version scheme vX.X.X.9yyy.
^*Note: While this branch is typically mostly stable it may
contain breaking issues/bugs.
I do try and keep development
ChangeLog
up to date so it’s easier to follow changes than reading commit history.

Bug Reports/New Features

If you run into any issues or bugs please submit a GitHub issue with details of the issue.

• If possible please include a reproducible example (suggest using
  SeuratData package pbmc
  dataset for lightweight examples.)

Any requests for new features or enhancements can also be submitted as GitHub issues.

• Even if you don’t know how to implement/incorporate with current
  package go ahead a submit!

Pull Requests are welcome for bug fixes, new features, or enhancements.

• Please set PR to merge with “develop” branch and provide description
  of what the PR contains (referencing existing issue(s) if
  appropriate).