Top C++ Frameworks & Libraries for biology

SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in script...

BioDynaMo is a high-performance and modular, agent-based simulation platform.

Precision current source, with optional optical feedback, for driving LEDs and laser diodes

Protein structure comparison tools such as SSAP and SNAP

Library for producing and processing on the Adaptive Particle Representation (APR).

Very cheap, autonomous and precise spectrophotometer for DIY biology and chemistry.

Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyse...

Multiscale simulation of multi-cellular system

ROS software repository, Robotics & Biology Laboratory, TU Berlin

LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language...

a novel object-oriented approach to the artificial neural networks inspired by synaptic plasticity between biological neurons...

DNAssist: the integrated editing and analysis of molecular biology sequences in Windows

A simulator for biological and physiological models

U12-type intron prediction and file parsing utility in modern C++

This repository contains the code for modeling a range of patterning and morphogenesis phenomena in biology....

Modeling of primers/probes hybridization on to a set of target viral sequences.

bamcc — split SAM/BAM files into connected components

tools and software for my spectrometers, sensors, pcr, and incubators

We want to build an open source Incubator for biology lab in Cameroon; since most of them are under-equipped due to the high cost of lab equipment. We believe that...

Protein folding simulator

Algorithms for computational biology.

A compilation of Applications using EPOC+ (EMOTIV) for BIOSVisLab in Center for Bioinformatics and Computational Biology from Colombia....

Comprehending the assembly and maintenance of microbial diversity in natural communities is a major problem of interest in biology. Here, we present a model of spe...

Some models

A gRNA database generation tool.

An organism simulation framework written in C++ to simulate an entire organism or parts of it

ESEMCUDA -- Epithelial Sub-cellular Element Method CUDA Package (For developmental biology simulations)...

Manipulate and generate figures for trees in Newick format

An IDE for synthetic biology

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

netZooC is a network biology package implemented in C.

MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)...

a C library for symbolic and numerical analysis of a system of ordinary differential equations (ODEs) derived from a chemical reaction network encoded in the Syste...

C++ implementation of self-organizing tree models for image synthesis

SBEToolbox (Systems Biology and Evolution Toolbox) is developed in MATLAB as a menu-driven UI software to determine various statistics of the biological network....

LITOS - an easy-to-use tool for optogenetic cell stimulation

A game where a roomba discovers amino-acids

computational biology grab-bag: messy one-off scripts for a variety of tasks

European Molecular Biology Open Software Suite

Freeform electronics sculpture of a SARS-CoV-2 virus that blinks it's own RNA sequence.

UC Irvine Mathematical Computational Systems Biology Bootcamp Computational Modules

Convert high-level facts-about biology into an executable model, using logical deduction (the name is a pun on synthesis + INDRA)...

Source code and main results

Drivers for peripheral devices of the biology payload (camera, valves, pumps, etc.)

This repository is about our first school project (2023 - 2024)! In this repository you can find the source code for our ecology, biology and chemistry based video...

🍶Systems-biology approach to GWAS.

BioPerf: A Benchmark Suite to Evaluate High-Performance Computer Architecture on Bioinformatics Applications...